PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11484.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 285aa    MW: 33026.1 Da    PI: 10.0771
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11484.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-161897288
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
          B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                fk+ + s+v    ++ +p+kf++++gg    s  + l+ +++++Wev    +k  g+++++kGWkeFv+   L+ g fv+Fk++g+s
  KHN11484.1 18 FKTILESNVE---WMKIPNKFTRRYGGG--LSNPVFLRPPDSKEWEVHW--TKENGEVWFQKGWKEFVEYYSLEHGHFVLFKYNGTS 97
                5555444444...789*********877..5667***************..*******************************98843 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.26714107IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-2215107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-1716105No hitNo description
Gene3DG3DSA:2.40.330.101.2E-2216107IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.4E-1317107IPR003340B3 DNA binding domain
PfamPF023621.0E-132496IPR003340B3 DNA binding domain
PROSITE profilePS508638.247159256IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-6205254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-5205255IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MATPPLVQRK ASLPIHFFKT ILESNVEWMK IPNKFTRRYG GGLSNPVFLR PPDSKEWEVH  60
WTKENGEVWF QKGWKEFVEY YSLEHGHFVL FKYNGTSLID VLILDRSAIE IDDEMGTVDP  120
NVEKLHADKG VRSDHHQTKV RVRPRSPLVS SEPRNKMPSE KAIERTSSLN TPKLLRAKKV  180
ARNFVSNNVF FTVVITRPQL EEGAWSWSVK LPNCRTISCG WCLFARENVL QIRNVCIFEL  240
ISTKDAVFKV PCFQKSNLIH TLVGAFSSWR ILNKYHFPLE WGKSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628020.11e-115PREDICTED: B3 domain-containing protein At1g49475-like
TrEMBLA0A0B2PUX00.0A0A0B2PUX0_GLYSO; B3 domain-containing transcription factor VRN1
STRINGGLYMA20G24256.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.15e-19B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]